We studied the spatial and temporal habitat use of impala in Botswana's Okavango Delta at landscape level with the aid of satellite imagery, with minimal fieldwork. We related remotely sensed vegetation to impala habitat preferences, by first distinguishing three vegetation types through a multi-temporal classification, and dividing these into subclasses on the basis of their Normalized Difference Vegetation Index (NDVI). This indicator for abundance and greenness of biomass was assessed for wet and dry season separately. Similarly, habitat use was assessed for both seasons by allocating vegetation classes to bimonthly impala observations. Impala distribution patterns coincided with NDVI-based subclasses of the landscape, nested within broad vegetation types, to which impala did not show a marked seasonal response. We suggest that this methodology, using limited field data, offers a functional habitat classification for sedentary herbivores, which appears particularly valuable for application in extensive areas with high spatial variability, but with restricted access.

Soil water content and above-ground biomass accumulation, above 10 cm high, were measured monthly in a flooded savanna ecosystem under grazing pressure and under cattle exclusion, during two growth cycles. Near-to-the-ground and below-ground biomass were measured three times during this period. Besides, composition, species richness and diversity were obtained through a floristic inventory. Despite a relatively high floristic richness and diversity, Panicum laxum is the dominant species throughout the study area, while three other perennial grasses, Paspalum chaffanjonii, Leersia hexandra and Axonopus purpusii, also reach high values of cover and biomass. Each of them reacts specifically to flooding, drought and grazing conditions. This ecosystem shows a strongly seasonal behaviour, with primary production, mortality and decomposition sharply timed by soil relative water content. Both drought and water excess seem to limit plant production, even more during wet years when the savanna might remain flooded for up to 4 mo. Some structural and functional differences between the grazed and the protected systems are demonstrated, but under the actual, relatively low stocking rate, the grazed savanna produces as much forage as the ungrazed one.

Ecosystem pool of phosphorus (P) was determined as the sum of above-ground vegetation, roots, necromass and soils to 1 m deep in a tropical rain forest in Sabah, Malaysia. Relationships among soil P fractions, acid phosphatase activity and fine-root biomass across soil horizons were also determined to understand P availability. Ecosystem pools of P, and of simultaneously quantified nitrogen (N) and carbon (C) were 3.4, 12 and 370 Mg ha−1, respectively. Only 2.6% of the total ecosystem P was in the above-ground vegetation, contrasting to C (60%) and N (16%). Canopy foliage of dominant tree species showed an extremely high N to P ratio of 31.5, which implied the excessively short supply of P compared with ample N. Soil P primarily consisted of recalcitrant occluded fractions (78–91%) and only 4% was labile. Approximately three-quarters of labile soil P was an organic fraction (Po). The concentration of labile Po did not differ between soil horizons, while both phosphatase activity and fine-root density were the greatest in the topsoil (top 5 cm) and dramatically decreased with depth. This suggests that trees depend on the acquisition of P from the labile Po in the topsoil, despite a greater amount of labile P in the subsoil. Trees with a high foliar N/P ratio may invest N to acquire P from the topsoil by secreting phosphatase that consists of proteins, rather than investing C to extending roots to scavenge P in the subsoil.

In heterotrophic streams the retention and export of coarse particulate organic matter and associated elements are fundamental biogeochemical processes that influence water quality, food webs and the structural complexity of forested headwater streams. Nevertheless, few studies have documented the quantity and quality of exported organic matter over multiple years and under a range of conditions that includes both droughts and hurricanes. This study quantifies the export of coarse particulate organic matter (CPOM, > 12.7 mm), over 18 y in two headwater streams in north-east Puerto Rico. Daily exports ranged from 0 to over 170 g ha−1 d−1 and averaged 7.39 g ha−1 d−1, with similar amounts coming from leaves (3.5 g ha−1 d−1) and wood (3.2 g ha−1 d−1). Export of coarse particulate organic carbon was 3.0 g ha−1 d−1 which constitutes only 1.32% of carbon exports. Most litter falling into the streams was processed in place as only 2.3% of the leaf litter falling directly into these perennial channels was exported as CPOM. On average, 6 wk y−1 had no exports while events transporting more than 10 g ha−1 d−1 occurred every 2.8 mo. Instead of a single annual pulse as observed in deciduous systems, there were annual peaks in CPOM exports during May and September and less export during the drier period from December to February. Ratios of C:N in the exported material were highest in the driest month and lowest during rainy months, while leaf fluxes for nitrogen, phosphorus and calcium were highest in rainy months and lowest during February. Although median daily exports and exports during low- and base-flow periods were similar before and after Hugo, after 16 y exports during moderate- and high-flow periods were still less than those in the 2 y prior to the hurricane. Our observations indicate a system with high rates of internal processing that quickly returns to median daily conditions following hurricanes but requires several decades for storm-flow exports to return to pre-disturbance conditions and indicates that the long-term pattern of CPOM export is associated with the level of maturity of watershed vegetation.

Our study investigated the influence of termitaria on vegetation utilization by elephants in Chewore North, Zimbabwe. Ten termite mounds and ten similar sized control plots were surveyed for soil nutrients, tree species diversity and plant biomass removal by elephants. Termite mounds had higher mean (± SE) concentrations of P, Ca, Mg and Na (0.15 ± 0.01, 48.8 ± 9.32, 5.78 ± 1.59 and 0.47 ± 0.12 meq per 100 g respectively) than control plots (0.05 ± 0.01, 3.33 ± 0.56, 1.53 ± 0.22 and 0.19 ± 0.02 meq per 100 g). However, Shannon Wiener index of tree diversity did not vary significantly between termite mounds (1.13 ± 0.280) and their control plots (0.827 ± 0.469). Contrary to most studies investigating patterns of vegetation utilization by large mammalian herbivores on termitaria, biomass removal was five times more on control plots than termite mounds. No difference in biomass removal was noted for Colophospermum mopane which had enough replicates for statistical analysis both on termite mounds and control plots. Our study negates the hypothesis that nutrient-rich soil patches will act as feeding hotspots for large mammalian herbivores. We concluded that vegetation utilization by elephants may be tree species specific, particularly in nutrient-rich environments.

A climate model, based on effects of water availability and temperature, was recently proposed to explain global variation in bat species richness along altitudinal gradients. Yet such studies are sparse in the tropics and near-absent in Africa. Here we present results from an altitudinal study of bat diversity from Mount Mulanje, Malawi. Using ground nets, canopy nets and harp traps, we sampled eight sites across three habitat zones from 630 m to 2010 m asl. We assessed the influence of climatic, geographic and biotic variables on measures of estimated species richness, Fisher's α, and an unbiased index of compositional turnover. We recorded 723 individuals and 30 species along the gradient, revealing a ‘low plateau’ pattern in estimated species richness, peaking at 1220 m, which is congruent with the global climate model. Measures of local habitat structure significantly explained a large degree of variation in species richness and compositional turnover between sites. Fisher's α was further significantly correlated to mean annual relative humidity, suggesting a background climatic influence.

Recent studies have shown that western lowland gorillas (Gorilla gorilla gorilla Savage & Wyman) are highly frugivorous and expel in their dung viable seeds of many fruit species they consume. As part of a wider study of their role as seed dispersers in tropical rain forest, the importance of gorillas as consumers of three species of tropical tree was investigated. The species studied were Ganophyllum giganteum (Sapindaceae), Cola lizae (Sterculiaceae) and Uapaca guineensis (Euphorbiaceae). Gorillas swallowed large quantites of seeds of these species whenever they were available, and removed a considerable proportion of the crop from trees they visited. The differences in abundance and distribution of these trees, and their varied dispersal strategies influenced the quantity of seeds that was removed by gorillas. Uapaca can be seen as having a generalist fruiting strategy, with a wide range of consumers, whereas the other species are more specialist, gorillas being the principal dispersers. Compared to other consumers, this study showed that gorillas provided potentially high quality dispersal because: (i) they were reliable visitors to trees of these species; (ii) they swallowed and dispersed large numbers of seeds; (iii) they treated seeds benignly and often deposited them in sites favourable for establishment.

The population dynamics of 8500 shade-tolerant tree seedlings of 13 tree species were followed for 10 years at rain forests in Lambir Hills National Park and Bako National Park, Malaysian Borneo. Since these dipterocarp forests have lower rates of canopy gap formation than do rain forests elsewhere, tree seedling biology was predicted to differ. Approximately 50% of seedlings present in 1986 were still alive in 1996. Seven out of thirteen had seedling populations composed predominantly of individuals that were at least 10 years old. These seedlings can undergo alternating periods of relatively rapid and slow growth. Many seedlings that grew rapidly in the first census interval survived through a period of suppression in the second census interval, and conversely many seedlings with a history of suppression had exceptionally high growth in the final census interval. Seedlings of South-East Asian forest tree species are long-lived and appear to be adapted to long periods of suppression in the understorey.

Tropical tree wood density is often related to other species-specific functional traits, e.g. size, growth rate and mortality. We would therefore expect significant associations within tropical forests between the spatial distributions of stand-level wood density and micro-environments when interspecific variation in wood density is larger than intraspecific variation and when habitat-based species assembly is important in the forest. In this study, we used wood cores collected from 515 trees of 72 species in a 15-ha plot in northern Thailand to analyse intra- and interspecific variation in wood density and the spatial association of stand-level wood density. Intraspecific variation was lower than interspecific variation (20% vs. 80% of the total variation), indicating that species-specific differences in wood density, rather than phenotypic plasticity, are the major source of variation in wood density at the study site. Wood density of individual species was significantly negatively related to maximum diameter, growth rate of sapling diameter and mortality of saplings. Stand-level mean wood density was significantly negatively related to elevation, slope convexity, sapling growth rate and sapling mortality, and positively related to slope inclination. East-facing slopes had significantly lower stand-level mean wood densities than west-facing slopes. We hypothesized that ridges and east-facing slopes in the study forest experience strong and frequent wind disturbance, and that this severe impact may lead to faster stand turnover, creating conditions that favour fast-growing species with low wood density.

Studies of seed dispersal and fruit production often use fruit traps. Different trap designs may give dissimilar estimates; however, prior to this study there has been no tropical forest field comparison of trap designs. Likewise, there are no recommendations about the number of traps required to assess ecological parameters, such as fruit production, mass and number of seeds dispersed, and number of plant species producing fruits. We compared the effectiveness of five trap designs in terms of fruit/seed bouncing out of traps, wind effects, area effects and seed removal by predators. These studies took place in Colombia in two tropical rain forests and in laboratory conditions. We found that 300 traps (0.085 m2 each) were not enough to obtain stable estimates in two out of four parameters (number of species and dispersed seeds). All estimates were highly variable when using fewer than 100 traps. All trap designs evaluated (mesh on PVC frame, hanging mesh, basin and funnel traps) prevent seed removal by predators, in sharp contrast with removal from the ground. Mesh traps were less affected by bouncing effects than plastic traps, and this factor was a large source of bias among estimates from different traps. Since up to 68% of dry mass may bounce out, it is important to consider adequate trap designs and to be careful when comparing studies using different methodologies. Small traps received fewer seeds per area, however area affects were not evident when bouncing effects were controlled for. We recommend the use of mesh traps on PVC frames, although hanging mesh traps are a good option in tropical forests without strong winds.

Mbau forest covers much of the Congo, and shifts in its composition could have a large impact on the African tropics. The Ituri forest in east Congo is near a boundary between the monodominant mbau type and non-mbau mixed forest, and two 20-ha censuses of trees ≥ 1 cm diameter were carried out over 12 y to monitor forest change. Based on published diameter allometry, mbau forest had 535 Mg ha−1 biomass above ground and gained 1.1 Mg ha−1 y−1. Mixed forest had 399 Mg ha−1 and gained 3 Mg ha−1 y−1. The mbau tree (Gilbertiodendron dewevrei) increased its share of biomass from 4.1% to 4.4% in mixed forest; other common species also increased. Sapling density declined at both sites, likely because increased biomass meant shadier understorey, but the mbau tree increased in sapling density, suggesting it will become more important in the future. Tree mortality and growth rates were low relative to other tropical forests, especially in the mbau plots. Shifting toward G. dewevrei would represent a large gain in carbon in the mixed forest, but mbau is presently more important as a high-carbon stock: biomass lost during forest harvest could not recuperate for centuries due to slow community dynamics.

Two kinkajous (Potos flavus) were equipped with radio-transmitters and tracked during a 14- and a 7-day period in a primary forest of French Guiana. Both individuals were strictly nocturnal. They moved between food patches (flowering or fruiting trees) during c. 65% of the night, visited food trees during c. 20%, while the remaining time was devoted to rest. Rest time tended to peak in the middle of the night, whereas distances travelled peaked at the beginning and the end of the night. Minimum and maximum home range areas, estimated from minimum area and minimum convex polygon methods respectively, reached 15.7 and 17.6 ha in the female, 26.6 and 39.5 ha in the male. Mean daily activity area amounted to 5.5 ha in the female, 11.3 ha in the male. Distances travelled in a night averaged 1495 m for the female, 2540 m for the male. In contrast to the female, the male used the periphery more intensively than the centre of its home range. Both individuals occupied several roosts located in the canopy, but one far more frequently than the others. The male's roosts were all situated in the periphery of the home range.

Kinkajous were observed feeding on flowers or fruits of 15 plant species. Among the 10 species exploited for fruits, at least seven were dispersed. Dispersal distances averaged 200 ± 75 m (13 seed dispersal occurrences for 16 defecations), while seed transit time varied from 45 min to 3 h 35 min. P. flavus appears to be nocturnal, solitary, a generalist fruit and flower-eater and an important seed dispersal agent.

Despite the important functional role of deep roots in withdrawing water during drought, direct measurements of root distribution are very rare in tropical rain forests. The aim of this study was to investigate the root distribution of Entandrophragma cylindricum, a common tree species in the Central African semi-deciduous rain forest, in Ferralsols and Arenosols. We dug two pits to a depth of 6 m in Ferralsols and two pits to a depth of 3 m in Arenosols, close to E. cylindricum trees. The vertical soil profiles were divided into 10 × 10-cm grid cells and the roots counted were distributed in three diameter classes. We fitted a root distribution model to our dataset. We found that vertical root distribution was shallower in Arenosols than in Ferralsols. Root penetration was not stopped even by a Ferralsol with high gravel content in its subsoil. Overall, our measurements showed that 95% of all roots were distributed to depths of between 258 and 564 cm from the soil surface, which is much deeper than the 95 cm depth previously reported in the literature for tropical rain forests. As sampling depth could explain this discrepancy, we recommend a sampling depth of at least 3–5 m to accurately estimate root distribution. The drier the dry season, the deeper the sampling depth should be. Our results are consistent with global models of root distribution in forest ecosystems, which are driven by climate variables. We thus suggest that deep rooting could be common in rain forests with a marked dry season.

A survey of the diurnal raptor community (46 resident species) at five altitudinal levels from 100 to 4600 m was made in Venezuela using 106 1-km2 sample quadrats and then compared with similar censuses (211 plots) in southwestern Colombia and eastern Ecuador. Six habitat types were defined and habitat preferences were measured from every encountered birds and from the association between individual abundances and the coverage of habitat types on plots. The overall species richness steeply declined with elevation in all three countries. The raptor community consisted mostly of tropical species that rapidly decreased in both abundance and frequency of occurrence with elevation. A small set of subtropical-temperate forest specialists partly replaced them at mid-elevation and only two species occurred in the paramo of Venezuela, against 5–7 in the other countries. Although originally the gradients were probably almost completely covered with forest, a large part of the raptor community is now composed of grassland species, three of them extending from the lowlands to the tree line. The relative impoverishment of the Venezuelan community, especially at upper levels, is attributed to a peninsular effect at the narrow extreme northern tip of the Andes and perhaps also to former forest fragmentation. Within some species, different subspecies had discrete altitudinal distributions and interspecific competition may explain differences in the range extension of some species between countries. Today, however, accelerating deforestation may result in a severe decline of forest-interior species and a probable reduction in the altitudinal range of at least some of them. Species naturally associated with forest gaps or edges usually tolerate a high degree of forest fragmentation and degradation but only one of them may become abundant in heavily human-altered woodlands. Few grassland specialists have become more widely distributed in the increasingly deforested landscapes.

Most ecological studies of fungi associated with tropical plants have focused on the rhizosphere or phyllosphere of seedlings, saplings and adult trees (Augspurger 1983, 1984; Bell et al. 2006, Gilbert 2002, Gilbert et al. 2002, Husband et al. 2002, Kiers et al. 2000, Mangan et al. 2004). However, fungi also infect the seeds of tropical trees, reducing seed survival and potentially affecting adult distributions (Gallery et al. 2007a, b). Fungicide experiments have shown that fungal and oomyceteous pathogens are the major cause of seed mortality in the soil for a variety of tropical pioneers (Dalling et al. 1998, Gallery et al. 2007b, Murray & Garcia 2002), which depend on recruitment from seed banks to colonize gaps and other disturbances in mature forest (Alvarez-Buylla & Martinez-Ramos 1990, Dalling et al. 1997, Hall & Swaine 1980). Persistence in the soil prolongs exposure of seeds to infection by soil-borne fungi and is especially problematic for small-seeded species with thin fruit or seed walls (Baskin & Baskin 1998, Blaney & Kotanen 2002, Crist & Friese 1993). At present little is known about the host affinity of fungi associated with seeds of tropical trees, and consequently, whether seed-infecting fungi influence plant species coexistence through differential infection of, or effects on, potential hosts.

Tropical rain forests are evergreen and experience a climate suitable for plant growth year round (Whitmore 1998). However, most tropical rain-forest trees display periodic shoot growth (Borchert 1991) and show synchronous leaf flushing at the community level (Itioka & Yamauti in press, Medway 1972, Ng 1981). Synchronous leaf flushing may have a great impact on animal population such as herbivores, because young leaves are suitable food resources for many herbivores (Aide 1988, 1992; Coley 1983, Itioka & Yamauti 2004, Lowman 1985).

The reciprocal importance of bromeliads and hummingbirds has been proposed for many years, even suggesting coevolution between these two groups. Nevertheless, data are lacking that allow a better test of the relationships involved. Here we investigate the relationship between bromeliads and hummingbirds in an area of secondary Atlantic rain forest in southern Brazil. The study examined the interactions among 12 species of bromeliad and 10 of hummingbird at Reserva Natural Salto Morato, Paraná state. The number of flowering species of bromeliad and the species richness and abundance of hummingbirds were quantified monthly between November 2004 and October 2005. Focal observations on each bromeliad species were made to determine the hummingbird visitors. Neither species richness nor abundance of hummingbirds were related to bromeliad phenology. Together with the monthly variation in visit frequency by a given pollinator to a given plant, these factors indicate a generalization in the use of bromeliads by hummingbirds and argue against tight coevolution. Ramphodon naevius and Thalurania glaucopis were the main pollinators in the community. Aechmea nudicaulis was the most generalist bromeliad species. The generalist species interacted with other generalists or with asymmetric specialists and there was no specialist–specialist interaction. This produced a strongly organized and nested matrix of interactions. This nestedness is similar to other plant-pollinators networks, supporting the hypothesis that the evolutionary relationship between bromeliads and hummingbirds is no stronger than that of other pollination networks.

We investigated the intraspecific variation in propagule mass within red mangrove (Rhizophora mangle) and its effect on carbon assimilation and seedling growth. Propagule sizes of red mangrove varied considerably at all three study sites along the south-eastern coast of Florida, with propagule fresh mass from 3.9 to 20.7 g for the scrub form and from 5.3 to 35.8 g for the tall form. Highly significant correlations were observed between propagule length and fresh weight at all three study sites and for two growth forms. The scrub form had significantly smaller propagules than the tall form. A greenhouse study showed that CO2 assimilation rates were not correlated with propagule mass, but total leaf area per plant increased significantly with increasing initial propagule mass in all three family lines of both the scrub and tall forms. Consequently, total carbon fixation rate by each seedling increased significantly with increasing propagule fresh weight in all cases, and the biomass increment significantly increased with increasing mass. Relative growth rate, however, was not correlated with propagule mass. The differences in leaf areas and biomass accumulation among seedlings from different sizes of propagules seem to have resulted from the differences in maternal reserve of hypocotyls. The considerable intraspecific variation in propagule size observed for red mangrove may have a significant effect on seedling growth and competitive ability.

The keystone plant resources (KPR) concept describes certain plant species in tropical forests as vital to community stability and diversity because they provide food resources to vertebrate consumers during the season of scarcity. Here, we use an 8-y, continuous record of fruit fall from a 1.44-ha mature forest stand to identify potential KPRs in a lowland western Amazonian rain forest. KPRs were identified based on four criteria: temporal non-redundancy; year-to-year reliability; abundance of reproductive-size individuals and inferred fruit crop size; and the variety of vertebrate consumers utilizing their fruit. Overall, seven species were considered excellent KPRs: two of these belong to the genus Ficus, confirming that this taxon is a KPR as previously suggested. Celtis iguanaea (Cannabaceae) – a canopy liana – has also been previously classified as a KPR; in addition, Pseudomalmea diclina (Annonaceae), Cissus ulmifolia (Vitaceae), Allophylus glabratus (Sapindaceae) and Trichilia elegans (Meliaceae) are newly identified KPRs. Our results confirm that a very small fraction (<5%) of the plant community consistently provides fruit for a broad set of consumers during the period of resource scarcity, which has significant implications for the conservation and management of Amazonian forests.

The Neotropics house two guilds of large arboreal vertebrate seed predators: parrots and the pitheciin primates. Both have diets dominated by immature fruits. The possibility of members of the Pitheciinae (genera Cacajao, Chiropotes and Pithecia) acting as occasional seed dispersers has been mooted, but not experimentally shown. We combined primate behavioural data and seed germination data from three separate field studies in the Brazilian states of Amazonas and Pará to analyse patterns of post-consumption seed survivorship for seeds discarded by three pitheciin species (Cacajao melanocephalus ouakary, Chiropotes chiropotes and Chiropotes albinasus). We then calculated the frequency of dispersal events for four species eaten by C. m. ouakary. All three primate species dropped intact seeds while feeding, and 30.7% of 674 dropped seeds germinated ex situ. Undamaged seeds from unripe and ripe samples germinated (29.3% and 42.7%, respectively), and all three primate species carried some fruits up to 20 m from the parent tree before consuming them. Potential seed-dispersal events varied from 1 (Macrolobium acaciifolium) per fruiting cycle to more than 6500 (Duroia velutina), suggesting that there are differences in dispersal potential. In summary, although they are highly specialized seed predators, these primates may also act as important dispersers for some plant species, and effective dispersal is not restricted to ripe fruits, as immature fruits removed from a tree may continue to mature and the seeds later germinate, a much-neglected aspect of dispersal ecology. The possibility that similar events occur in parrots should be experimentally investigated.