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X-ray powder diffraction data for 7-ethyl-14-nitro-camptothecin, C22H19N3O6

Published online by Cambridge University Press:  07 September 2018

Wan Wang
Affiliation:
College of Chemical Engineering, Sichuan University, Chengdu 610065, China
Zili Suo
Affiliation:
College of Chemical Engineering, Sichuan University, Chengdu 610065, China
Lidong Liao
Affiliation:
Sichuan Sinovation Biotech Co., Ltd., Chengdu 610063, China
Hui Li*
Affiliation:
College of Chemical Engineering, Sichuan University, Chengdu 610065, China
*
a)Author to whom correspondence should be addressed. Electronic mail: lihuilab@sina.com
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Abstract

X-ray powder diffraction (XRD) data, unit-cell parameters and space group for 7-ethyl-14-nitro-camptothecin, C22H19N3O6, are reported [a = 10.987(5) Å, b = 10.941 (9) Å, c = 8.438 (2) Å, α = 71.321(6)°, β = 96.145(0)°, γ = 95.139(3)°, unit-cell volume V = 953.87 Å3, Z = 2, ρcal = 1.467 g cm−3, and space group P-1]. All measured lines were indexed and are consistent with the P-1 space group. No detectable impurities were observed.

Type
New Diffraction Data
Copyright
Copyright © International Centre for Diffraction Data 2018 

I. INTRODUCTION

7-Ethyl-14-amino-camptothecin was reported as a promising candidate for tumor treatment based on its superiority to traditional camptothecin derivatives, including excellent efficacy, acceptable safety, significant brain penetration and poor substrate properties toward the major drug-resistant pumps (Duan et al., Reference Duan, Cai, Meng, Sun and Liu2011; Cheng et al., Reference Cheng, Qiu, Yang, Liu and Wen2015). The title compound, 7-ethyl-14-nitro-camptothecin (ENC, Figure 1), is an intermediate in the synthesis of 7-ethyl-14-amino-camptothecin from 7-ethylcamptothecin (Duan et al., Reference Duan, Cai, Meng, Sun and Liu2011). Therefore, it is very important to design the crystallization techniques of ENC as well as to be certain of its crystal structure.

Figure 1. Molecular diagram for 7-ethyl-14-nitro-camptothecin.

To date, detailed X-ray powder diffraction (XRD) data for ENC have not been reported.

II. EXPERIMENTAL

A. Sample preparation

ENC was obtained from Sichuan Sinovation Biotech Co., Ltd., China. It was re-crystallized in methanol–dichloromethane (1 : 1, v/v), then dried and ground into powder. The sample was characterized by melting point (306.9 °C), density (1.459 g cm−3), FT-IR (Supplementary Figure S1) and MS ([M + H]+ = 422.1, Supplementary Figure S2). Further, a purity of 98.5% was checked by HPLC (Supplementary Figure S3).

B. Diffraction data collection and reduction

XRD measurements were performed at room temperature using an X'Pert PRO diffractometer (PANalytical Co., Ltd., Netherlands) with a PIXcel one-dimensional detector and Cu radiation (λ = 1.5406 Å, generator voltage and current were set at 40 kV and 40 mA). The diffraction data were collected over the angular range from 4° to 50° 2θ with a step size of 0.013 13° 2θ and a counting time of 29.07 ms per step (Figure 2).

Figure 2. XRD pattern of 7-ethyl-14-nitro-camptothecin using Cu radiation.

Data evaluation was performed using the software package Material Studio 8.0 (Accelrys Co., Ltd., San Diego, California, USA) in the Analytical & Testing Center (Sichuan University, Chengdu, China). The XRD pattern was pre-treated by subtracting the background, smoothing, and stripping off the 2 component. Automatic indexing results were obtained with DICVOL91 (Boultif and Louër, Reference Boultif and Louër1991). The following figures of merit were achieved: F 27 = 26.6 (0.0132, 77) (Smith and Snyder, Reference Smith and Snyder1979) and M 27 = 11.1 (de Wolff, Reference de Wolff1968). The indexing results were then refined using Pawley refinement (Pawley, Reference Pawley1981), which involves assigning the Miller indices (h, k, l) to each observed peak in the experimental XRD pattern.

III. RESULTS

The experimental powder diffraction pattern is depicted in Figure 2. Indexing results showed that ENC is triclinic, space group P-1 and unit-cell parameters: a = 10.987(5) Å, b = 10.941 (9) Å, c = 8.438 (2) Å, α = 71.321(6)°, β = 96.145(0) °, γ = 95.139(3)°, unit-cell volume V = 953.87 Å3, Z = 2, ρ cal = 1.467 g cm−3. The values of 2θ obs, d obs, I obs, h, k, l, 2θ cal, d cal, I cal, Δ2θ are listed in Table I. All measured lines were indexed and are consistent with the P-1 space group. No detectable impurities were observed.

Table I. Indexed XRD data for 7-ethyl-14-nitro-camptothecin, C22H19N3O6. The d-values were calculated using Cu radiation (λ  =  1.540 56 Å).

Supplementary material

The supplementary material for this article can be found at https://doi.org/10.1017/S0885715618000684.

References

Boultif, A. and Louër, D. (1991). “Indexing of powder diffraction patterns for low-symmetry lattices by the successive dichotomy method,” J. Appl. Crystallogr. 24, 987993.Google Scholar
Cheng, X., Qiu, N., Yang, J., Liu, H., and Wen, J. (2015). “Preparation, characterization, and in vivo study of 7-ethyl-14-aminocamptothecin-loaded poly(ethylene glycol) 2000-poly(lactic acid)2000 polymeric micelles against H460 human nonsmall cell lung carcinoma,” J. Pharm. Sci.-US. 104(11): 39343942.Google Scholar
de Wolff, P. M. (1968). “A simplified criterion for the reliability of a powder pattern,” J. Appl. Crystallogr. 1, 108113.Google Scholar
Duan, J., Cai, X., Meng, F., Sun, J. D., and Liu, Q. (2011). “14-Aminocamptothecins: their synthesis, preclinical activity, and potential use for cancer treatment,” J. Med. Chem. 54(6): 17151723.Google Scholar
Pawley, G. S. (1981). “Unit-cell refinement from powder diffraction scans,” J. Appl. Crystallogr. 14(6), 357361.Google Scholar
Smith, G. S. and Snyder, R. L. (1979). “FN: a criterion for rating powder diffraction patterns and evaluating the reliability of powder indexing,” J. Appl. Crystallogr. 12, 6065.Google Scholar
Figure 0

Figure 1. Molecular diagram for 7-ethyl-14-nitro-camptothecin.

Figure 1

Figure 2. XRD pattern of 7-ethyl-14-nitro-camptothecin using Cu radiation.

Figure 2

Table I. Indexed XRD data for 7-ethyl-14-nitro-camptothecin, C22H19N3O6. The d-values were calculated using Cu radiation (λ  =  1.540 56 Å).

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