In this paper we study the number of rational points on curves in an ensemble of abelian covers of the projective line: let
$\ell$ be a prime,
$q$ a prime power and consider the ensemble
${\mathcal{H}}_{g,\ell }$ of
$\ell$-cyclic covers of
$\mathbb{P}_{\mathbb{F}_{q}}^{1}$ of genus
$g$. We assume that
$q\not \equiv 0,1~\text{mod}~\ell$. If
$2g+2\ell -2\not \equiv 0~\text{mod}~(\ell -1)\operatorname{ord}_{\ell }(q)$, then
${\mathcal{H}}_{g,\ell }$ is empty. Otherwise, the number of rational points on a random curve in
${\mathcal{H}}_{g,\ell }$ distributes as
$\sum _{i=1}^{q+1}X_{i}$ as
$g\rightarrow \infty$, where
$X_{1},\ldots ,X_{q+1}$ are independent and identically distributed random variables taking the values
$0$ and
$\ell$ with probabilities
$(\ell -1)/\ell$ and
$1/\ell$, respectively. The novelty of our result is that it works in the absence of a primitive
$\ell$th root of unity, the presence of which was crucial in previous studies.