This review describes the potentials of a new omics science in the dairy sector, particularly regarding the improvement of animal health and welfare. The three-dimensional network of water hydrogen bonds is a dynamic entity, subject to the influence of its components and properties of the environment. For this reason, it is sensitive to any chemical, physical or biological perturbation of the system. Therefore, the aqueous matrix acts as a sensitive sensor, reflecting the state, behaviour, and functionality of the system and providing similar information on its components. Aquaphotomics builds upon these underlying assumptions. It is a scientific discipline that combines spectroscopy with multivariate spectral analysis to extract the absorbance spectral pattern of water, which describes how water molecular structure changes in response to perturbations. Many studies assessed the applicability of this approach, including veterinary diagnostics. The water spectral pattern can be used as a multidimensional biomarker for rapid and non-invasive discrimination between healthy and diseased systems, even in the subclinical phase. Adopting such an approach, focused on precision farming, can foster subsequent optimisation of animal production performance and improve the overall profitability of farming operations.

Signal transducers and activators of transcription (STAT) genes are involved in signal mediation of various hormones and cytokines. STAT1 located on chromosome number 2 is involved in mammary gland development and is associated with milk composition traits in bovines. This study aimed to find any relationship and impact of STAT1/BspHI gene with milk fat and protein yields in a herd of Holstein Friesian (HF) crossbred cattle of sub-tropical climate of Northern India. Milk composition data of 535 adult HF crossbred cows for a period of 12 years was collected from the records maintained at Livestock Farm, Guru Angad Dev Veterinary and Animal Sciences University. First lactation data of 222 animals was chosen for further analysis. After data correction for non-genetic factors (season of calving, period of calving, interaction effect of season and period of calving and age at first calving) these animals were categorised into two groups based on corrected high and low milk fat and protein yields. Forty animals were then selected for blood collection and further laboratory analysis. Amplified using PCR-RFLP technique, the 314 bp STAT1 gene was digested using BspHI restriction enzyme. C-T polymorphism at nucleotide position 201 and 260 of the STAT1 amplicon was observed. At 201, for genotype AA and Aa, the genotypic frequencies were 0.80 and 0.20%. At 260, for genotype BB and Bb, the genotypic frequencies were 0.25 and 0.75%. Least square analysis showed a significant association of all genotypes with milk fat and protein yields. Hence, STAT1 can be used as a potential candidate gene to aid in better animal selection in breeding programmes.

This study aimed to estimate live body weight from body measurements for Holstein × Zebu dairy cows (n = 156) reared under conditions of humid tropics in Mexico using multivariate adaptive regression splines algorithm (MARS) with several train-test proportions. The body measurements included withers height, rump height, hip width, heart girth, body length and diagonal body length. The data were divided into 65:35, 70:30 and 80:20 split data for training and testing sets, respectively. The MARS algorithm was used to construct a prediction model, which predicted the body weight from the body measurements of the test dataset. The results emphasized that the MARS algorithm had an explanation rate for 80:20 train and test set of 0.836 and 0.711, respectively, with minimum Akaike information criterion values. This indicates that it is a reliable way of predicting body weight from body measurements. The results suggest that body weight prediction can be performed with the MARS algorithm in a reliable way, therefore, this algorithm may be a useful tool for animal breeders and researchers in the development of feeding and selection-aimed approaches.

The aim of this study was to evaluate parameters for the prediction of peripartum hypocalcemia in cattle. The study consisted of two independent investigations (A and B) conducted in different time periods and locations. Blood sera were analyzed for the activity of alkaline phosphatase (ALP), the concentration of ionized (iCa), and total calcium (Ca) two weeks before calving. On the day of calving, urinary net acid/base excretion was calculated, and the serum Ca concentration was analyzed. Ca concentration less than 2 mmol/l on the day of calving was defined as hypocalcemia. The results differed between the two investigations. Part A showed high predictive values for the antepartum parameters ALP and Ca concentration, but these could not be replicated in part B. Animals enrolled were quite young (average age 5.5 years) and the group of animals with hypocalcemia was comparably small in both investigations. The reason(s) for the different results in investigation A and B are not clear. These findings indicate that there are probably as yet unidentified parameters and influences on calcium homeostasis in cattle. None of the parameters investigated in the present study can be considered a reliable universal parameter for prediction of hypocalcemia risk in general.

This research paper proposes a simple image processing technique for automatic lameness detection in dairy cows under farm conditions. Seventy-five cows were selected from a dairy farm and visually assessed for a reference/real lameness score (RLS) as they left the milking parlor, while simultaneously being video-captured. The method employed a designated walking path and video recordings processed through image analysis to derive a new computerized automatic lameness score (ALDS) based on calculated factors from back arch posture. The proposed automatic lameness detection system was calibrated using 12 cows, and the remaining 63 were used to evaluate the diagnostic characteristics of the ALDS. The agreement and correlation between ALDS and RLS were investigated. ALDS demonstrated high diagnostic accuracy with 100% sensitivity and specificity and was found to be 100% accurate with a perfect agreement (ρc = 1) and strong correlation (r = 1, P < 0.001) for lameness detection in binary scores (lame/non-lame). Moreover, the ALDS had a strong agreement (ρc = 0.885) and was highly correlated (r = 0.840; 0.796–1.000 95% confidence interval, P < 0.001) with RLS in ordinal scores (lameness severity; LS1 to LS5). Our findings suggest that the proposed method has the potential to compete with vision-based lameness detection methods in dairy cows in farm conditions.

This research paper describes a validation study evaluating the ability of IceTag accelerometers (Peacock Technology, UK) to detect play behaviour in weaned dairy calves. Play behaviour is commonly observed in young animals and is regarded as an indicator of positive welfare states. Eight Holstein Friesian calves aged three to five months old were monitored using leg-mounted accelerometers for 48 h. Data generated by accelerometers to quantify calf activity included step count, lying times and a proprietary measure of overall activity termed ‘motion index’ (MI). Calf behaviour was filmed continuously over the same 48-h period using closed circuit television cameras and analysed using one-zero sampling to identify the presence (1) or absence (0) of play within each 15-min time period. A positive correlation between MI and visually recorded play was found. Visual observations were compared with accelerometer-generated data and analysed using 2 × 2 contingency tables and classification and regression tree analysis. A MI value of ≥69 was established as the optimum threshold to detect play behaviour (sensitivity = 94.4%; specificity = 93.6%; balanced accuracy = 94.0%). The results of this study suggest that accelerometer-generated MI data have the potential to detect play behaviour in weaned dairy calves in a more time efficient manner than traditional visual observations.

This Research Communication set out to (1) evaluate the behaviour and performance of dairy calves raised on pasture individually or in groups, and (2) evaluate the influence of physical enrichment on the behaviour and performance of dairy calves raised in groups on pasture. Although there was no difference in grazing behaviour when housed in groups, calves spent longer eating concentrate, ruminating and drinking water. Additionaly, calves housed individually spend part of their time trying to get close to a neighbouring calf. When available, the brush was the physical enrichment item most used by calves followed by straw-man and ball. Pasture access may allow calves to exhibit their highly motivated natural behaviours such as grazing and rumination. Furthermore, social housing provides dairy calves an opportunity for social bonding. Thus, social housing with free access to pasture areas could be an alternative in tropical regions to the typical individual rearing system used in intensive dairy farming.

Integrons are important genetic elements that allow easy acquisition and dissemination of antimicrobial resistance genes. Studies reporting occurrence of integrons in Staphylococcus aureus (S. aureus) isolated from bovine mastitis in large dairy farms across China are scarce. The aim of this study was to investigate the occurrence of class 1 integrons (intI1), antimicrobial resistance (AMR) and associated genes in S. aureus isolated from bovine mastitis and their associations. Minimum inhibitory concentrations (MICs) were determined to evaluate the AMR phenotypes, whereas PCR was carried out to assess the occurrence of AMR genes and intI1. In addition, index cluster analysis was used to estimate associations between AMR phenotype, genotype and intI1 in 103 isolates. Overall, 83% of S. aureus were intI1-positive and 5 types of gene cassettes were detected. Susceptibility against single antimicrobial agents ranged from 0% (erythromycin), 12% (ampicillin) and 16% (penicillin G) to 96% (gentamicin). Most isolates (64%) were intermediate-resistant against erythromycin, whereas resistance against ceftriaxone (22%), clindamycin (4%), cefotaxime (2%), tetracycline (1%) and ciprofloxacin (1%) were relatively uncommon. The predominant resistant gene was blaZ gene (n = 88, 85%) followed by tetD gene (n = 85, 83%). With an estimated prevalence of 12% of the mecA gene, methicillin-resistant S. aureus isolates had higher MIC50 and MIC90 for majority of antimicrobials than methicillin-susceptible S. aureus isolates. Presence of the ermC gene was associated with erythromycin resistance. Ampicillin, erythromycin and penicillin G resistance were associated with intI1. The data presented in our study indicated that class 1 integron-mediated resistance possibly plays an important role in dissemination of AMR in S. aureus isolated from bovine mastitis.

This research paper aimed to demonstrate that mammary secretions provided by sheep farmers across Scotland from cases of clinical mastitis are free from environmental contamination, as well as to provide information on the major bacterial causes of disease and levels of antimicrobial resistance. Mastitis represents one of most significant diseases of small ruminant production worldwide. Staphylococcus aureus, Mannheimia haemolytica, Streptococcus uberis and coagulase-negative Staphylococcal species are common pathogens isolated from cases of sheep mastitis. Sampling kits supplied to 23 farms provided 33 samples for bacteriology, antimicrobial susceptibility testing and genetic analysis. Of the bacterial isolates identified, 60% were S. aureus, 23% M. haemolytica and 7% coagulase-negative staphylococci. Low levels of antimicrobial resistance were identified in the S. aureus isolates which provided novel multi-locus sequence types. In conclusion, this proof-of-concept survey demonstrated that mammary secretions free from environmental contamination may be provided by sheep farmers. It also provided data on the prevalence of antimicrobial resistance associated with clinical mastitis in sheep and will inform on the scale required for larger surveys aiming to improve current strategies for mastitis control in sheep flocks across the UK.

This research communication addresses the hypothesis that double premilking teat disinfection (DD) is more effective in reducing soiling and bacterial count on the cows' teat skin and milkers' gloves than conventional disinfection (CONV). The design was a 3 × 3 Latin square (three groups of cows and three treatments) with conventional teat disinfection (CONV, lactic acid application after forestripping), double teat disinfection using the same disinfectant (DD1D, lactic acid application before and after forestripping), and double teat disinfection using two different disinfectants (DD2D, application of lactic acid before and chlorine-based disinfectant after forestripping). All groups were assigned for six days for each treatment, and the evaluations and samples were collected on the last day, before and after treatment. We evaluated the teat cleanliness score (TCS), count of Gram-negative bacteria (coliforms and noncoliforms), Staphylococcus spp., Streptococcus spp., and total bacterial count (TBC) on the cows' teats and TBC on the milkers' gloves. TCS after premilking was lower in DD than CONV treatment. The reduction of Staphylococcus spp. count was greater in the DD treatment and tended to be higher in the DD2D. The TBC reduction on the cows' teats was greater in the DD treatments. The TBC on the milkers' gloves was lower for DD before and after premilking. In conclusion, DD can be an alternative for reducing some bacterial populations on cow teats and preventing the transmission of microorganisms between cows via the milkers' hands.

We aimed to determine the efficacy of different post-milking teat dips in the prevention of intramammary infection and teat condition scores in common crossbred cows (Holstein Frisian × Tharparkar) found in Indian sub-tropical conditions. Eighty healthy crossbred cows were selected and randomly divided into four groups: untreated control, 1% w/v iodine, 5% v/v lactic acid and finally essential oil mix (eucalyptus, lavender, peppermint, and tea tree oils). Samples were collected quarter-wise (n = 308). Sampling as well as teat scoring was done simultaneously. 1st sample was collected before starting teat dipping, followed by 15th day in milk (DIM), 45th DIM and 90th DIM, respectively. The study found that post-milking teat dipping significantly reduced the mean California mastitis test score, somatic cell count and electrical conductivity of the milk in the treatment groups compared to the control group, and also improved milk yield in the treatment groups. There were no differences between the individual treatments. The study also found a significant reduction in teat end condition and teat skin condition after 90 d of post-milking teat dipping.

This research communication screened and identified differentiated expressed genes in bovine mammary epithelial cells (BMECs) upon prolactin (PRL) stimulation. PRL of 5 μg/ml increased β-casein synthesis in BMECs with milk protein synthesis capacity. RNA sequencing (RNA-seq) was used to screen differentially expressed genes (DEGs). A total of 375 DEGs (165 up-regulated and 210 down-regulated) were identified between PRL-stimulated group and the control group. Gene ontology enrichment analysis showed that the up-regulated genes were primarily associated with cell functions, metabolic processes, and biological regulatory processes. Pathway enrichment analysis showed that the up-regulated genes were mainly enriched in JAK-STAT, Rap1, Ras and Notch signaling pathways, which are widely involved in cell proliferation, differentiation and milk component synthesis. This study provides an initial understanding of the changes in gene expression in BMECs with PRL-stimulation, as determined by RNA-seq transcriptomic analysis, thereby enhancing our knowledge of the molecular regulation of lactation metabolism.

The aim of this research was to investigate the ability of an in vitro simulated gastrointestinal digestion (SGID) to generate peptides from bovine lactoferrin (LF) that possess antibacterial activity. Escherichia coli was examined as the target pathogen due to its prevalence in foods and the well-documented antibacterial effect of both LF and LF peptides against this organism. Results showed that in-vitro digested LF, specifically gastric LF digesta, exhibited significant antibacterial activity at low concentrations against E. coli compared to its undigested counterpart. Additionally, the highest antibacterial activity in the gastric digesta was associated with a relatively high molecular weight fraction of >30 kDa obtained within the first 30 min of the SGID. This demonstrates that the digestive process can result in the generation of antibacterial LF peptides and contribute to improving the antimicrobial properties of LF exhibited in its undigested state, making it a suitable dairy food additive to potentially provide protection against bacterial pathogens within the gastrointestinal system.

This study aimed to elucidate the effects of various nutritional supplements on the physical, structural and sensory attributes of low-fat yogurt derived from camel milk, with the longer-term objective of enhancing its appeal and suitability for elderly consumers. Fresh camel milk was obtained from an Australian farm. Two yogurt variants were created: plain yogurt (CMY) and yogurt with added fructooligosaccharides, microbial transglutaminase (a ubiquitous food additive with potential health risks), apple pectin and linseed oil (CMYWA). The syneresis index of these yogurts was quantified through centrifugation, colour changes due to additives were assessed via colorimetric methods and both viscosity and granulometry were determined using precise instrumental techniques. After 7 d refrigerated storage, syneresis was 50% in CMY vs. 30% in CMYWA. Viscosity on day 7 was 205 mPa.s for CMYWA vs. 110 mPa.s for CMY. The CMYWA granule size increased from 2.1 μm on day 0 to 2.8 μm on day 14, while CMY granule size remained stable around 1.9 μm. Lactobacilli counts were higher in CMYWA at 2.8 × 107 CFU/g vs. 2.3 × 106 CFU/g in CMY. In a paired preference test with 37 consumers aged 18–65, CMYWA was significantly preferred over CMY. Sensory evaluations further substantiated that the yogurts with added supplements were more appealing to the palate. The results demonstrate the supplements improved camel milk yogurt properties.

This research communication aimed at assessing the microbial quality and preparation practices of dahi/thayir, a popular traditional fermented milk product, in households from two distinct agroecological zones in Kerala, India, namely the high-range and central midland, We highlighted the significant variations and potential food safety concerns associated with regional differences in production methods. The local climate significantly influenced the incubation temperature of dahi/thayir, thereby influencing the types of microflora involved in the fermentation process. Data on preparation practices and sensory preferences were collected from producers during the sampling process, covering 200 households. There were significant variations in preparation practices between the two regions, particularly concerning the type of container used, inoculation rate and incubation period. Samples from the high-range region exhibited significantly higher acidity and coliform count as well as yeast and mold count than the central midland region. The household fermentation of milk is often uncontrolled, causing increased acidity levels. This uncontrolled fermentation favored the growth of contaminants such as coliforms and yeast, posing a potential threat to food safety. This study underscores the importance of understanding microbial quality variations and preparation practices in dahi/thayir production, emphasizing the need for proper fermentation techniques and hygienic practices to ensure the safety and quality of this traditional fermented milk product.

An attempt was made to develop a novel dairy-based dip-like product from heat-acid-induced milk gel and whey. Based upon preliminary trials, the combination of cream (15–35%), whey (60–70%) and common salt (0.8–1.0%, all three as weight of heat-acid-induced milk gel) was selected for optimization of the dairy dip through factorial design of response surface methodology (RSM). Addition of glycerol monostearate, trisodium citrate and sodium hexametaphosphate each at the rate of 0.3% (as weight of heat-acid-induced milk gel) in the formulation was previously standardized. The optimization was carried out by analysing the textural and sensorial parameters of the dairy-based dip. The sensorial parameters (flavour, body and texture, colour and appearance and overall acceptability) and textural parameters (firmness, stickiness, work of shear and work of adhesion) were significantly (P < 0.05) correlated with the ingredient formulation. RSM analysis suggested the use of cream, whey and common salt at amounts of 27.92, 60.26 and 0.8% of the weight of heat-acid-induced milk gel for preparing dairy-based dip with a desirability of 0.84. The formulated product contained a lower fat but higher protein and lactose content than cheese dip.

In this research article, response surface methodology (RSM) based optimization of three production parameters namely temperature, time and amount of starter culture of Vechur cow milk yoghurt (VCMY) on the basis of sensory evaluation responses comparing cross-bred cow milk yoghurt (CCMY) as the control is reported. The optimized values of production parameters were 2.15 per cent rate of inoculation, 42°C incubation temperature and 4 h incubation period. The optimized product exhibited significantly lower syneresis, a*, b* values and higher L* values than CCMY. Physico-chemical, microbiological, textural and sensory properties of both VCMY and CCMY during room temperature and refrigerated storage were assessed daily until the onset of spoilage (room temperature) or at five day intervals over a period of 15 d (refrigerated). Both room temperature stored products were graded undesirable by the sensory panel upon one day of storage. Significant reduction was observed in the fat, SNF, total solids, protein and pH content and all the tested colour parameters of the optimized product during refrigerated storage. Total viable counts as well as yeast and mould counts and lactic acid bacteria counts of both VCMY and CCMY progressively increased over the 15 d of storage. Significant reductions were observed in the flavour (P < 0.01), body and texture, colour and appearance and overall acceptability (P < 0.05) scores of both the samples over a period of 15 d. During storage, hardness and adhesiveness values showed an increasing trend whereas the cohesiveness showed a decreasing trend. Storage studies revealed significant differences in the acidity, pH, syneresis, tyrosine value, colour parameters and sensorial attributes of both the yoghurt samples. During the 15 d refrigerated storage period, the VCMY exhibited superior technological attributes to CCMY in terms of lower syneresis %, acidity, microbial population, firmer and less cohesive texture, better flavour, colour and appearance scores. Being the first comprehensive study on the utilization of Vechur cow milk for the preparation of yoghurt, the data generated in the current study would provide a solid base for the exploration of fermentation as a means of value addition of milk of this very rare indigenous cattle breed.

We compared the effects of two waste-based culture media (M1 and M2) on the technological properties of Lacticaseibacillus paracasei 90 (L90) for its application as a secondary culture in Cremoso cheese. The following parameters were studied at different ripening times: pH (7, 20, and 40 d), microbiological counts, carbohydrates and organic acids (7 and 40 d), moisture, fat, protein and volatile compounds (40 d). The viability and the metabolic performance of the strain in cheeses were also verified along ripening. Lactobacilli counts in experimental cheeses manufactured with L90 were ~8 log CFU/g at 40 d, meanwhile adventitious lactobacilli reached ~4 log CFU/g in the control cheese (made without L90). The levels of lactic acid, citric acid and pyruvic acid were similar among cheeses at 40 d, reaching levels of ~1433 mg/100 g, ~172 mg/100 g, and 7 mg/100 g, respectively. However, the concentration of lactic acid showed numerical differences between experimental and control cheeses. The cheeses made with the adjunct culture showed lower residual galactose (< 588 mg/100 g) in comparison with the control cheese (836 mg/100 g), highlighting the potential of L90 to play a bioprotective role. In the same vein, orotic and hippuric acids were metabolized at different degrees in cheeses made with L90, reaching levels of < 3.7 mg/100 g and < detection limit, respectively, at 40 d. In general, volatile compounds profiles were not negatively affected by the culture media used. On the contrary, the production of key aroma compounds (diacetyl and acetoin) was positively affected by the growth of L90 in these alternative media. The results demonstrated that the L90 strain could be used as an adjunct culture in Cremoso cheese, regardless of the culture media employed for its growth.

The continuing emergence of new variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) could be ameliorated by infection prevention through daily diet. In this study, we examined the anti-SARS-CoV-2 activity of 10 commercially available dairy products. They did not show any cytotoxicity against VeroE6/transmembrane protease serine 2 (TMPRSS2) cells (CC50 > 4 mg/ml). Importantly, these cells were checked using the cytopathic effect (CPE) assay, and 4 mg/ml dairy products reduced virus-induced CPE by more than 30%. Notably, Icreo akachan milk, an infant formula, showed the highest antiviral activity with an IC50 of 1.4 mg/ml. We assessed the effects of the dairy products on the entry of SARS-CoV-2 pseudovirus. R1 and Yakult, lactic acid bacterial beverages, inhibited viral entry with IC50 of 2.9 and 3.5 mg/ml, respectively. Collectively, these results indicate that commercially available dairy products moderately inhibit SARS-CoV-2 infection and may reduce the incidence of viral infections.