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Single-crystal structure analysis of designer drugs circulating in the Japanese drug market by the synchrotron radiation X-ray diffraction

Published online by Cambridge University Press:  20 June 2017

Takashi Hashimoto*
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
Ruri Hanajiri
Affiliation:
National Institute of Health Sciences, 1-18-1 Kamiyoga, Setagaya-ku, Tokyo 158-8501, Japan
Nobuhiro Yasuda
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
Yuki Nakamura
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
Nobuhiro Mizuno
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
Sadao Honda
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
Shinjiro Hayakawa
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan Faculty of Engineering, Hiroshima University, 1-4-1 Kagamiyama, Higashi-Hiroshima-shi, Hiroshima 739-8527, Japan
Yoshinori Nishiwaki
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan Faculty of Education, Kochi University, 2-5-1 Akebono-cho, Kochi 780-8520, Japan
Shigeru Kimura
Affiliation:
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
*
a)Author to whom correspondence should be addressed. Electronic mail: thashimoto@spring8.or.jp
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Abstract

Over the past 20 years, many designer drugs derived from controlled substances have been widely distributed as easily available psychoactive substances and have become a serious problem in Japan. In order to determine the absolute structures of four new designer drugs derived from medicines (methylphenidate and phenmetrazine) X-ray single-crystal structure analyses were performed using the BL26B1 beamline of synchrotron radiation facility SPring-8. The results show that the molecular configuration of these designer drugs (having two asymmetric carbons), which were distributed in the illegal drug market had threo-forms as found for methylphenidate and phenmetrazine.

Type
Technical Articles
Copyright
Copyright © International Centre for Diffraction Data 2017 

I. INTRODUCTION

Recently, many designer drugs whose structures have been slightly modified from the structures of controlled substances have emerged in the world. According to the EMCDDA–Europol 2015 Annual Report, several analogs of methylphenidate and phenmetrazine were detected from illegal products in European countries (EMCDDA, 2015). Methylphenidate is a therapeutic medicine for the treatment of attention deficit hyperactivity disorder and narcolepsy. Additionally, phenmetrazine is a stimulant, which was previously used as an appetite suppressant. These drugs are also known as drugs of abuse. Most of their absolute structures are not clear, although they sometimes have chiral carbons in their structures. Stereoisomers can be separated using the appropriate chromatography; however, it is difficult to determine their absolute structures without reference materials. Single-crystal X-ray structure analysis should be the best method to determine the absolute structure. For rapid analysis of the absolute structure, it is important to measure the crystal without recrystallization from the test sample, because crystal structure is possibly changed by re-crystallization.

To perform accurate and rapid X-ray structure analysis from small crystals, the X-ray structure analysis techniques using the synchrotron radiation are developed in SPring-8. Using BL40XU beamline, the absolute structures of two designer drugs are determined (Hashimoto et al., Reference Hashimoto, Honda, Yasuda, Kimura, Hayakawa, Nishiwaki and Takata2015).

In this paper, we investigated the absolute structure of newly emerged four analogs of methylphenidate and phenmetrazine (having two asymmetric carbons) using the BL26B1 beamline.

II. MATERIAL

We analyzed four designer drugs circulating in the Japanese drug market: 3-fluorophenmetrazine hydrochloride (C11H14FNO・HCl) (3FPM), mephenmetrazine hydrochloride (C12H17NO・HCl) (MPM), isopropylphenidate hydrochloride (C16H23NO2・HCl) (IPP), and methylnaphthidate hydrochloride (C18H21NO2・HCl) (MNP). 3FPM and MPM are the derivative compounds of phenmetrazine and IPP and MNP are the methylphenidate derivatives. Hydrochloride salts of all of them are crystalline white powders (Figure 1).

Figure 1. (Colour online) Chemical formulas and 2D structures of four designer drugs.

Chemical formulas were determined by accurate mass spectrometer and two-dimensional (2D) structural formulas were determined by NMR (nuclear magnetic resonance), but steric structures were not elucidated. All of these drugs have two asymmetric carbons, so all of them can occur as stereoisomers, for example, threo or erithro.

III. EQUIPMENT

A. X-ray beam and goniometer

The single-crystal X-ray diffraction (XRD) measurements were carried out by the structure measurement system installed in the SPring-8 BL26B1 beamline (Ueno et al., Reference Ueno, Kanda, Hirose, Ida, Kumasaka and Yamamoto2006).

X-rays were monochromatized by Si (111) monochromator and wavelength was 0.750 00 Å. A toroidal mirror and collimator focused beam size of 50–100 µm circular size. A single crystal of the several microns to tens of microns of the sample drug was attached to a polyimide pin. The high precision alignment of the microcrystal is brought by only the single-axis (ω-axis) rotationgoniometer. The eccentricity of the rotation axis is <1–4 µm. Control of the measurement temperature 220 K is maintained by a nitrogen stream

B. 2D detector for the quick measurement

The crystal was measured by the oscillation method, and diffraction intensity data were recorded by a charge-coupled device (CCD) detector: MX225 (Rayonix) (BL26B1), whose CCD area: 225 × 225 mm2

Number of pixels: 3072 × 3072, pixel size 73 µm.

Camera distance was 55 mm to gather high angle reflections of the organic small molecules.

Equipment is shown in Figure 2.

Figure 2. (Colour online) Sample holder and goniometer (left side) and X-ray CCD detector (right side).

IV. METHOD

A. Sample pick up and X-ray measurement

Single particles from the drug powder sample were measured without recrystallization, and were picked up using a MiTeGen Micro Mount. Particle sizes are shown in Figure 3.

Figure 3. (Colour online) Crystal powder particles of drugs in Micro Mounts. The red circle shows the X-ray beam size.

Because the CCD area is large, capturing of the reflections is rapid. Crystals were scanned from 0° to 180° with scan step 1°, exposure time was 1 s. Measurement times were 10 min to gather 180 diffraction images. Figure 4 shows one of the diffraction images of 3FPM. After 180 images of one crystal were measured, the orientation of crystal was changed and 180 more images were measured in order to increase the completeness. For measurement of 3FPM, 2033 reflections were collected from 360 diffraction images and completeness was 0.986 (2θ: 2.992°-53.708°). For the other three crystals, completenesses were as follows: IPP: 0.918 (2θ: 4.680°-53.716°), MPM: 0.997 (2θ: 3.502-53.716°), MNP: 0.870 (2θ: 3.464°-53.706°).

Figure 4. (Colour online) One of the diffraction images of 3FPM.

B. Determination of initial structure model and the refinement of structure model

1. Determination of the initial structure model

Using structure analysis software SHELXS (Sheldrick, Reference Sheldrick2008), the initial structure model was determined by direct methods. Atomic species were assigned based on the expected molecular structure. The hydrogen atoms were generated at calculated positions.

2. Refinement of structure model

Refinement software SHELXL (Sheldrick, Reference Sheldrick2008) was used for fitting the structure to measured diffraction data. Refined parameters were the positions of atoms (XYZ), and anisotropic displacement coefficients (U ij ).

V. RESULTS

A. 3-Fluorophenmetrazine hydrochloride

Figure 5 shows the molecular structure of 3FPM (C11H14FNO・HCl) and Figure 6 shows the packing image. This measured structure is threo and the space group is monoclinic Cc. (S,S) and (R,R) molecules occur in the lattice.

Figure 5. (Colour online) Molecular structures of 3FPM.

Figure 6. (Colour online) Packing image of 3FPM.

B. Mephenmetrazine

Figure 7 shows the molecular structure of MPM hydrochloride (C12H17NO・HCl) and Figure 8 shows the packing image. This measured structure is threo and the space group is orthorhombic P212121. Because the measured crystal was racemic twin, (S,S) and (R,R) molecule occur in the crystal.

Figure 7. (Colour online) Molecular structures of MPM.

Figure 8. (Colour online) Packing image of MPM.

C. Isopropylphenidate hydrochloride

Figure 9 shows the molecular structure of IPP (C16H23NO2・HCl) and Figure 10 shows the packing image. This measured structure is threo and the space group is monoclinic C2/c. (S,S) and (R,R) molecules are in the lattice.

Figure 9. (Colour online) Molecular structures of IPP.

Figure 10. (Colour online) Packing image of IPP.

D. Methylnaphthidate

Figure 11 shows the molecular structure of MNP (C18H21NO2・HCl) and Figure 12 shows the packing image. This measured structure is threo and the space group is monoclinic P21/c. (S,S) and (R,R) molecules are in the lattice.

Figure 11. (Colour online) Molecular structures of MNP.

Figure 12. (Colour online) Packing image of MNP.

Finally, the drugs for which we determined the molecular structure were hydrochlorides of:

  1. (1) 3-Fluorophenmetrazine: threo-2-(3-fluorophenyl)-3- methylmorpholine;

  2. (2) Methylnaphthidate: threo-methyl 2-(naphthalen-2-yl)-2-(piperidin-2-yl)acetate;

  3. (3) Isopropylphenidate: threo-isopropyl 2-phenyl-2-(piperidin-2-yl)acetate;

  4. (4) Mephenmetrazine: threo-3-methyl-2-(p-tolyl)morpholine.

Stereochemical structural formulas of four drugs determined by XRD and IUPAC name are shown in Figure 13.

Figure 13. (Colour online) Stereochemical structural formulas of four drugs and IUPAC names.

VI. CONCLUSIONS

We successfully analyzed four designer drugs circulating in the Japanese illegal drug market. All of these drugs have two asymmetric carbon atoms, and steric structures of diastereomers of these four drugs were determined by single-crystal X-ray structure analysis.

The single-crystal X-ray structure analysis using synchrotron radiation X-ray has been proven to be the useful technique for the structure determination of designer drugs having a lot of stereoisomers.

Structural CIF files have been deposited with ICDD.

ACKNOWLEDGEMENTS

The synchrotron radiation experiments were performed at the BL26B1 of SPring-8 with the approval of the Japan Synchrotron Radiation Research Institute (JASRI) (Proposal No. 2015B1104). The presentation for the conference was financially supported by the RIKEN SPring-8 Center.

References

EMCDDA (2015) EMCDDA – Europol 2015 Annual Report on the Implementation of Council Decision 2005/387/JHA.Google Scholar
Hashimoto, T., Honda, S., Yasuda, N., Kimura, S., Hayakawa, S., Nishiwaki, Y., and Takata, M. (2015) “Single-crystal structure analysis of drug powder sample by synchrotron radiation microbeam X-ray,” Adv. X-ray Anal. 59, 169.Google Scholar
Sheldrick, G. M. (2008). “A short history of SHELX,” Acta Crystallogr. A64, 112.Google Scholar
Ueno, G., Kanda, H., Hirose, R., Ida, K., Kumasaka, T., and Yamamoto, M. (2006) “RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation,” J. Struct. Funct. Genomics 7, 15.CrossRefGoogle ScholarPubMed
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Figure 1. (Colour online) Chemical formulas and 2D structures of four designer drugs.

Figure 1

Figure 2. (Colour online) Sample holder and goniometer (left side) and X-ray CCD detector (right side).

Figure 2

Figure 3. (Colour online) Crystal powder particles of drugs in Micro Mounts. The red circle shows the X-ray beam size.

Figure 3

Figure 4. (Colour online) One of the diffraction images of 3FPM.

Figure 4

Figure 5. (Colour online) Molecular structures of 3FPM.

Figure 5

Figure 6. (Colour online) Packing image of 3FPM.

Figure 6

Figure 7. (Colour online) Molecular structures of MPM.

Figure 7

Figure 8. (Colour online) Packing image of MPM.

Figure 8

Figure 9. (Colour online) Molecular structures of IPP.

Figure 9

Figure 10. (Colour online) Packing image of IPP.

Figure 10

Figure 11. (Colour online) Molecular structures of MNP.

Figure 11

Figure 12. (Colour online) Packing image of MNP.

Figure 12

Figure 13. (Colour online) Stereochemical structural formulas of four drugs and IUPAC names.