Introduction
Seed germination is a critical phase in the life cycle of a weed, and successful establishment of weeds depends significantly on their ability to germinate, where germination is the result of complex connections between multiple internal and external factors (Bewley and Black Reference Bewley and Black1994; Sohrabi et al. Reference Sohrabi, Ghanbari, Rasehd Mohassel, Gherekhloo and Vidal2016). Environmental factors such as water activate the enzymatic activity required to initiate germination activities (Baskin and Baskin Reference Baskin and Baskin2014; Bewley et al. Reference Bewley, Bradford, Hilhorst and Nonogaki2013). The absence of water can prevent the timely germination of seeds of many weed species, while dormancy mechanisms can control germination in some species (Bewley et al. Reference Bewley, Bradford, Hilhorst and Nonogaki2013). Temperature is another critical factor that can regulate the occurrence and speed of germination (Campbell-Martinez et al. Reference Campbell-Martinez, Thetford, Miller and Perez2017; Chauhan et al. Reference Chauhan, Gill and Preston2006; Derakhshan et al. Reference Derakhshan, Gherekhloo, Vidal and De Prado2014; Nosratti et al. Reference Nosratti, Abbasi, Bagheri and Bromandan2017). Soil temperature controls the rate of germination by affecting the seed dormancy levels and the proportion of the enzymatic activities (Bewley et al. Reference Bewley, Bradford, Hilhorst and Nonogaki2013). Other environmental factors such as light can stimulate germination of some species; these species are expected to be more prevalent in no-till cropping systems (Cousens et al. Reference Cousens, Baweja, Vaths and Schofield1993). Cultural operations, including tillage or sowing, may bury weed seeds at various depths and thereby affect germination and seedling emergence due to altered accessibility of required moisture, temperature, and light exposure (Buskin and Buskin 1985; Singh et al. Reference Singh, Kaur, Kang and Singh2012). Hence, knowledge about weed seed biology will help identify the mechanisms that trigger germination and provide effective management decisions for targeted weed species (Bhowmik Reference Bhowmik1997; Singh et al. Reference Singh, Kaur, Kang and Singh2012).
Amaranthus species are among the most troublesome weeds in many crop production systems (Hao et al. Reference Hao, Lv, Bhattacharya and Fu2017). The genus Amaranthus has many species—redroot pigweed (Amaranthus retroflexus L.), smooth pigweed (Amaranthus hybridus L.), Powell’s amaranth (Amaranthus powellii S. Watson), Palmer amaranth (Amaranthus palmeri S. Watson), common and tall waterhemp [Amaranthus tuberculatus (Moq.) Sauer]—all of which are primarily weedy pests in cultivated crops (Horak et al. Reference Horak, Peterson, Chessman and Wax1994). The germination ecology of different species of Amaranthus, including spiny amaranth (Amaranthus spinosus L.), green amaranth (Amaranthus viridis L.), purple amaranth (Amaranthus blitum L.), and A. palmeri, in response to environmental factors has been studied, with germination response thresholds to environmental factors differing between species (Chauhan and Johnson Reference Chauhan and Johnson2009; Costea et al. Reference Costea, Weaver and Tardif2004; Ghorbani et al. Reference Ghorbani, Seel and Leifert1999; Guo et al. 2003; Hao et al. Reference Hao, Lv, Bhattacharya and Fu2017; Sellers et al. Reference Sellers, Smeda, Johnson, Kendig and Ellersieck2003; Steckel Reference Steckel2004). For instance, among the nine tested Amaranthus species, including tumble pigweed (Amaranthus albus L.), prostrate pigweed (Amaranthus blitoides S. Watson), A. hybridus, A. palmeri, A. powellii, A. spinosus, A. retroflexus, and A. tuberculatus, germination of A. powelli exhibited the highest total germination across all temperatures (ranging from 5 to 35 C) compared with the other amaranth species, while A. blitoides seed demonstrated the lowest total germination (Steckel et al. Reference Steckel, Sprague, Stoller and Wax2004). Recently, Hao et al. (Reference Hao, Lv, Bhattacharya and Fu2017) demonstrated that A. viridis is noticeably less tolerant than A. retroflexus and A. blitum of the same potential of moisture deficit. Although most of the previous studies have examined certain germination characteristics of different Amaranthus species, there is no information available for dwarf amaranth (Amaranthus macrocarpus Benth.). Amaranthus macrocarpus is considered a summer (December to February) weed in Australia. This species is widely distributed in northeast Australia and is rapidly emerging in other parts of Australia, especially areas with subtropical or tropical weather and well-distributed rain (Manalil et al. Reference Manalil, Werth, Jackson, Chauhan and Preston2017). The species can exist in both the irrigated and rainfed cotton (Gossypium hirsutum L.) systems of Australia (Charles et al. Reference Charles, Taylor, Roberts, Sindel and Johnson2004; Walker et al. Reference Walker, Taylor, Milne, Osten, Hoque and Farquharson2005; Werth et al. Reference Werth, Boucher, Thornby, Walker and Charles2013). Previous weed surveys in 2008 to 2009 and 2010 to 2011 by Werth et al. (Reference Werth, Boucher, Thornby, Walker and Charles2013) concluded that this small-seeded species is favored by reduced-tillage systems, which has led to its rapid emergence as a problematic weed. Most importantly, A. macrocarpus belongs to the genus Amaranthus, a genus with many member species having resistance due to high selection pressure of herbicides, including glyphosate (Vieira et al. Reference Vieira, Samuelson, Alves, Gaines, Werle and Kruger2018). Concern exists that A. macrocarpus may also possess attributes of resistance to glyphosate. Our random weed surveys conducted across three seasons from 2016 to 2018 indicated an increase in its prevalence over time in northern Australian glyphosate-based cotton-farming systems. Despite its spread, and the risk of it developing herbicide resistance, the ecology and persistence of this species in different Australian agroecological areas has not been studied. Precise knowledge of the germination ecology of this species in response to different environmental factors is required to develop ideal weed management options. This study was conducted to evaluate the germination response of A. macrocarpus under different environmental conditions.
Materials and Methods
Sources of Seeds and Germination Procedure
The mature seeds of A. macrocarpus were collected from two different cotton farms in 2017. Seed of the first population (D-P-01) was collected from a southern cotton farm located at Hillston, NSW, Australia (33.50°S, 145.45°E), and seed of the second population (D-P-02) was collected from a northern cotton farm located at Yandilla, QLD, Australia (27.48°S, 151.21°E). Seed with visible damage was removed from the experiments. The seed samples were collected at the seed maturity stage. The preliminary germination study showed that the seeds of both populations were not dormant. All experiments consisted of three replicates of 25 seeds placed on two sheets of filter paper (No. 4 filter paper, Whatman International, Maidstone, UK) in 9-cm petri dishes, unless specified otherwise. The filter paper was moistened initially with 5 ml of test solution or distilled water. After seeds were placed, all dishes were sealed with parafilm (American National, Greenwich, CT, USA) to prevent desiccation. The petri dishes with treated seeds were kept inside an incubator (Lindner + May, Brisbane, QLD, Australia) at various temperatures. The total number of seeds germinated was determined after 7 d, except in seed burial depth studies.
Germination Response to Temperature
The germination response of A. macrocarpus to temperature was evaluated by incubating seeds in growth chambers (Lindner + May) under constant temperatures ranging from 25 to 45 C at 5 C intervals and also under alternating temperature ranges (30/20, 35/25, 40/30 and 45/35 C) in light/dark cycles. The objective of this experiment was to find the optimum temperature conditions for germination. These temperature ranges were selected to reflect the current temperature and projected future variation that might occur in Australia. Based on the results of this study, all succeeding experiments were conducted at 40/30 C day/night temperature with a 12-h photoperiod, as maximum germination occurred at these conditions for both populations.
Germination Response to Light
Seed germination of two populations of A. macrocarpus was determined under two light conditions. The first light treatment was a 12-h photoperiod (hereafter “light”), and the second treatment was continuous darkness (hereafter “dark”) in a growth incubator for 7 d under a day/night temperature cycle of 40/30 C. The petri dishes were covered in two layers of aluminum foil to incubate in dark environments as previously proposed by Baskin and Baskin (Reference Baskin and Baskin2014). The relative light germination (RLG) was measured by the formula (Equation 1) proposed by Milberg et al. (Reference Milberg, Andersson and Thompson2000):
where G l is percentage of germination in the presence of light and G d is percentage of germination in darkness. RLG represents a range of values from 0 (germination only in the dark) to 1 (germination only with light). Mean germination or emergence time (MGT), which is a measure of the speed of germination or emergence, was calculated after 7 d using the following formula (Equation 2):
where D n is the number of seeds that had germinated by n days, and D t is the number of days counted from the beginning of the germination experiment.
Germination Response to Salt Stress
The effect of salt stress on germination of A. macrocarpus was determined by placing seeds on filter paper in petri dishes containing 5 ml of 0, 25, 50, 100, 150, and 200 mM sodium chloride solutions (sodium chloride, AR grade, Merck, Melbourne, VIC, Australia). The treatment solutions were prepared by dissolving the required amount of salt (0, 1.5, 2.4, 5.8, 8.8, and 11.7 g of NaCl) in 1 L of de-ionized water (Ahmed et al. Reference Ahmed, Opeña and Chauhan2015; Asaduzzaman et al. Reference Asaduzzaman, Koetz and Rahman2019; Michel Reference Michel1983). This range of NaCl concentrations reflects the salinity stress levels determined to exist in the surface of the heavy grey cracking clays (grey vertosols) mainly used for cotton production in the northern cropping region of Australia.
Germination Response to pH
The impact of pH on germination of A. macrocarpus was evaluated by using four different pH buffer solutions: 4, 6, 8, and 10. The buffer pH solutions were prepared based on a method previously described by Chachalis and Reddy (Reference Chachalis and Reddy2000). This range of pH values (4–10) reflects pH values commonly found in Australian soils (Caritat et al. Reference Caritat, Cooper and Wilford2011). The final pH value of tested solutions was measured just before solutions were placed in the dishes by using a water-quality pH meter (Model 860033, SPEP Scientific, Frederick, MD, USA) at room temperature.
Emergence Response to Soil Type and Seed Burial Depth
The effect of burial depth on seedling emergence under two different soil types was evaluated in the glasshouse. Two soil types were compared; their properties are presented in Table 1. Before seed burial, 15-cm-diameter pots were filled with soil, irrigated (every alternate day for 2 min with manual sprinkler), and kept for 14 d in a glasshouse. Any seedlings from the soil weed seedbank were removed before the seed burial experiment. A total of 50 seeds of each population were placed separately on the soil surface of the pots and then covered with the same soil to depths 0, 2.5, 5, 7.5, and 10 cm. Pots were initially watered manually with an overhead sprinkler and later with an automated sprinkler irrigation system. Seedling emergence was counted until 21 d, as after that no further emergence was observed.
a Seeds of both populations of Amaranthus macrocarpus were buried at different depths in both soils.
Statistical Analysis
A randomized complete-block design with three replications was considered for all experiments. Each experiment was repeated after the end of the first run. Data from two runs were pooled, as there was no time by treatment interaction as determined by ANOVA. A three-parameter gaussian model (Equation 3) was fit to the germination values resulting from the constant temperature effect experiment. The model was:
where a is the height of the curve’s peak (maximum germination); b is the position of the center of the peak (the constant temperature required to achieve maximum germination), and c is the width of the curve. An ANOVA was used to assess the effect of alternating temperature on seeds germination. A three-parameter log-logistic (nonlinear) dose–response model (Seefeldt et al. Reference Seefeldt, Jensen and Fuerst1995) was fit (Equation 4) for data derived from the salt stress experiment:
In Equation 4, c and d are the lower and upper response against the explanatory variable (salt stress), respectively. The mean response of the control treatment corresponds to the upper limit d. ES50 is the effective salt stress level required to reduce germination by 50%, and b is the slope of the curve around ES50. A polynomial regression model (Equation 5) was used to detect the effect of different pH buffer solutions on germination:
where y is the response variable (% germination) and β0 is the estimated model intercept. The parameters β1 and β2 are coefficients.
The normality and distribution of data were verified by a Shapiro-Wilk normality test. The data variance was also examined by plotting the residuals to confirm homogeneity of variance. The significant differences among treatment means were identified by Tukey’s honest significant difference at P < 0.05. The R packages drc (Ritz and Streibig Reference Ritz and Streibig2008) and agricolae (De Meddiburu Reference De Meddiburu2017) were used in RStudio (RStudio 2019) for model fitting and summarizing data.
Model Goodness of Fit
The candidate models were assessed based on Akaike’s information criteria (AIC) and mean square-root (MSE) values; the nested models were compared using MSE, and the nonnested models were assessed based on the difference of AIC value (if the difference was >2, then model with the lowest AIC value was selected). Root mean-square error (RMSE) and adjusted R2 were calculated further to test the goodness of fit for the selected best models, as they are commonly used to estimate model quality (Sarangi et al. Reference Sarangi, Irmak, Lindquist, Knezevic and Jhal2015; Werle et al. Reference Werle, Sandell, Buhler, Hartzler and Lindquist2014). The RMSE was calculated based on the equation (Roman et al. Reference Roman, Murphy and Swanton2000):
where P i is the predicted value, O i is the observed value, and n is the total number of observations.
A smaller RMSE value means a better fit to the model due to closer observed and predicted values.
Results and Discussion
Germination Response to Temperature
There was a significant (P < 0.05) interaction between temperature and population on total germination of A. macrocarpus. Each population had a similar response in the constant temperature experiment, with both not germinating below 20 C. Greatest germination in this experiment was achieved for both populations at 35 C (89% and 82% for D-P-01 and D-P-02, respectively) (Figure 1). Amaranthus macrocarpus germination at high temperatures enables the species to grow under hot Australian conditions. Seeds of this species will not germinate in winter in the field and will remain dormant until late spring to summer. This could explain the higher infestations of A. macrocarpus in the warmer cotton-cropping systems. Similarly, mature A. palmeri seeds remain dormant during autumn and winter (<20 C) and become nondormant during summer (Jha et al. Reference Jha, Norsworthy, Riley and Bridges2008; Jha and Norsworthy Reference Jha and Norsworthy2009). When temperatures were cycled (Figure 2), germination at 40/30 C resulted in maximum germination (91% and 85% for D-P-01 and D-P-02, respectively) followed by 35/25 C (72% and 76% for D-P-01 and D-P-02, respectively). Germination decreased significantly when cycled at 45/35 C. The alternating temperatures 40/30 C resulted in maximum germination (91% and 84%) for both populations (D-P-01 and D-P-02, respectively). Higher germination at alternating temperatures than at constant temperatures in both populations indicates that both day and night temperatures influence germination of A. macrocarpus. The stimulation of germination by alternating temperatures has also been reported for other Amaranthus species (Baskin and Baskin, Reference Baskin and Baskin1977, Reference Baskin and Baskin1998; Gallagher and Cardina Reference Gallagher and Cardina1998a, Reference Gallagher and Cardina1998b; Guo and Al-Khatib Reference Guo and Al-Khatib2003; Leon and Owen Reference Leon and Owen2003; Steckel et al. Reference Steckel, Sprague, Stoller and Wax2004). Temperature fluctuations like alternating temperature regimes have been shown to reduce dormancy, decrease time to onset of germination, and increase germination rates in Amaranthus species (Jha et al. Reference Jha, Norsworthy, Riley and Bridges2010; Oladiran and Mumford Reference Oladiran and Mumford1985; Thomas et al. Reference Thomas, Burke, Spears and Wilcut2006; Weaver Reference Weaver1984), because alternating temperatures are most similar to diurnal temperature responses and can break seed coat–imposed physical dormancy of seeds (McKeon and Mott Reference McKeon and Mott1982).
Germination Response to Light
A significantly (P < 0.001) greater number of seeds germinated under light/dark conditions than under complete darkness. More than 90% germination was recorded for both populations under the 12-h light/dark cycle (Table 2). Significant (P < 0.018) differences were observed between populations for seed emergence under the dark condition. Germination in constant dark conditions was 17.5% and 12% for populations D-P-01 and D-P-02, respectively. This demonstrates that A. macrocarpus is photoblastic and light can stimulate germination. There was a significant (P < 0.0013) difference between populations for RLG, with mean germination being higher for D-P-02 (0.88) than D-P-01 (0.84). This ecological distinction is especially vital in the case of small-seeded species like A. macrocarpus, because they have restricted resources, and seeds buried deeply in the soil will not emerge successfully (Fenner and Thompson Reference Fenner and Thompson2005; Pons Reference Pons and Fenner2000). Milberg et al. (Reference Milberg, Andersson and Thompson2000) reported that light response and seed mass coevolved as an adaptation to ensure the germination of small-seeded species, particularly when they are near the soil surface. The difference between populations in terms of germination rate under dark conditions might be due to the influence of different maternal environments during the seed development stage. Inhibition of germination in the dark indicates that tillage and mulching may play a key role in reducing germination of A. macrocarpus in cropping fields by burying or covering seeds until seed death occurs. This is consistent with Kigel (Reference Kigel and Paredes-Lopez1994), who reported that most species of Amaranthus respond to light, and the response level varies among species (Cristaudo et al. Reference Cristaudo, Gresta, Luciani and Restuccia2007; Gallagher and Cardina Reference Gallagher and Cardina1998a).
a A significant difference (P < 0.05) was observed between populations in response to light effect. Mean values are presented with different lowercase letters (a and b).
b Sample sites were georeferenced with a GPS.
Germination Response to Salt Stress
Germination was reduced when NaCl concentration increased from 25 to 200 mM, and neither population germinated at 150 mM NaCl (Figure 3). Only 5% and 15% germination was observed at 100 mM NaCl for D-P-01 and D-P-02, respectively. A three-parameter log-logistic model described the relationship between germination of A. macrocarpus and salt concentration. The corresponding concentrations for 50% inhibition of maximum germination were 34 and 41 mM NaCl for D-P-01 and D-P-02, respectively. The differential response in germination according to populations, with germination of D-P-02 being less affected, suggests that some adaptation to saline conditions is present in this population. However, this needs to be clarified by examination of more populations collected from both northern and southern Australia. The population sourced from the northern Australia (D-P-02) appears to be more able to establish in moderate to highly saline conditions from 50 to 150 mM compared with the population collected in the south (D-P-01). Previously, Hao et al. (Reference Hao, Lv, Bhattacharya and Fu2017) reported germination significantly decreased with 100 mM for A. spinosus, 50 mM for A. viridis, and 150 mM for A. blitum. However, in our study, germination significantly decreased with respect to the control (0 mM) at 50 mM for both populations, suggesting A. macrocarpus is more sensitive to NaCl than the species described by Hao et al. (Reference Hao, Lv, Bhattacharya and Fu2017).
Germination Response to pH
Germination followed a quadratic response to increasing levels of pH, and seeds of both populations exhibited broad adaptability, germinating across a wide range of soil pH conditions (Figure 4). Germination was about 60% for both populations in acidic conditions (pH 4). The highest germination was observed in pH 7 buffer solution at 91% and 93% for D-P-01 and D-P-02, respectively, and after that declined at pH 8 and pH 10, although more than 70% of seeds germinated for both populations at pH 8. Both populations had about 70% germination at pH 10. In this study, we found that germination of A. macrocarpus varied over a range of pH values; however, germination was optimal in neutral to alkaline pH environments. Our findings also support the similar response previously observed in A. retroflexus and A. blitum, which had higher germination response at higher pH values (Hao et al. Reference Hao, Lv, Bhattacharya and Fu2017). This implies that high germination potential and adaptability to a wide range of pH values might play a key role contributing to population establishment and colonization in new areas. Such rapid distribution of this species can be an additional management issue for a newly affected areas.
Emergence Response to Soil Type and Seed Burial Depth
There was a significant (P < 0.005) difference for both different soil types and different burial depths in limiting seed germination. The percent emergence of A. macrocarpus was greater in heavy grey cracking soil than in acidic red soils, ranging from 0% to 47% and 0% to 36%, respectively (Figure 5). However, there was no significant (P > 0.05) difference between populations for seed emergence as affected by soil types and burial depths. The maximum mean number for seed emergence occurred at 0.5-cm depth in both soils, with 47% and 36% emergence for grey and acidic red soils, respectively. Seed emergence of A. macrocarpus was different within a range of soil burial depths (0.5 to 7.5 cm) in both soils, and seedbank depletion is slower in red soil than in grey soil, possibly due to different soil physiochemical properties, including pH, nitrogen, sulfur, and organic carbon content (Table 1). At 7.5-cm depth, less than 10% of seed emerged in the acidic red soil, and observed emergence was 0 at a depth of 10 cm in either type of soil. Small-seeded weeds, such as other Amaranthus species, can only germinate from shallow soil depths of 0.5 to 2.5 cm (Baskin and Baskin Reference Baskin and Baskin1998; Benech-Arnold et al. Reference Benech-Arnold, Sánchez, Forcella, Kruk and Ghersa2000; Buhler et al. Reference Buhler, Mester and Kohler1996; Gallagher and Cardina Reference Gallagher and Cardina1998a; Ghorbani et al. Reference Ghorbani, Seel and Leifert1999; Leon and Owen Reference Leon and Owen2003; Oryokot et al. Reference Oryokot, Murphy and Swanton1997). In our current study, we found that seedling emergence on the soil surface was lower than germination observed in controlled conditions such as petri dishes in the presence of light. This difference could be due to poor soil–seed interaction or greater unavailability of moisture on the soil surface than on the filter papers.
Based on the results of our experiment, we conclude that the germination potential of A. macrocarpus under a wide spectrum of environmental conditions is likely to make it a persistent weed. Amaranthus macrocarpus could be troublesome in reduced or no-tillage cropping systems of Australia. However, tillage practices that bury seeds by turning over the topsoil are potential options to inhibit the emergence and growth of this species. Integrated weed management tactics, including mulch or stubble retention, can also reduce seed germination (Steinsiek et al. Reference Steinsiek, Oliver and Collins1982). Because A. macrocarpus germinates well under cotton’s preferred pH range (5.5 to 8.0), altering soil pH is not a plausible weed management strategy for this weed species. Therefore, more work needs to be conducted to determine the optimal soil pH for controlling A. macrocarpus in cotton-cropping systems, as a pH below 5.5 will significantly limit the availability of some nutrients to the crop and will likely reduce crop vigor, competitiveness, and yield.
Our results will support growers in developing effective management strategies for this weed species. Seed collections of A. macrocarpus from other locations in Australia may have different responses to environmental conditions because of biological diversity in populations.
Acknowledgments
We thank Cotton Research Development and Corporation (CRDC) and NSW Department of Primary Industries for funding this research. We are grateful to Cotton Info for their support in tracing weed populations. The authors declare that they have no known conflict of interest that could have appeared to influence the work reported in this paper.